[ont_qc][run_stats] allow to use compressed sequencing_summary file as input
exemple of command line used :
/work/user/ng6/jflow/work/ont_qc/wf000790/.working/de57b055ac/_Stash/0/0/0/w0000005 /work/project/PlaGe/nextflow/wf-nanopore-nf/20240318_1429_GeckoTEk-SLiTE44-1-T12-L05-LSK114_1E_PAU82109_d9f4ec55_PC24B191/work/53/6cc53dcfe91ee7b570a1a40d5054b8/sequencing_summary_PAU82109_d9f4ec55_c1036f3b.txt /work/user/ng6/jflow/work/ont_qc/wf000790/.working/de57b055ac/Run_stats.stderr
check how to replace sequencing_summary_PAU82109_d9f4ec55_c1036f3b.txt with sequencing_summary_PAU82109_d9f4ec55_c1036f3b.txt.gz (allow to use both files) > modif R script
Edited by Gerald Salin