purge : fastq.gz for ont are not deleted
https://genomique.genotoul.fr/Mantis/view.php?id=5811 Pour supprimer les fastq.gz d'ONT lors de la purge, j'ai mis à jour le find dans /usr/local/bioinfo/src/nG6/ui/nG6/Classes/Controller/class.tx_nG6_utils.php : [code=bash]find '.$directory.' -maxdepth 1 -not -name ".html" -not -name ".png" -not -name ".log" -not -name ".log.gz" -not -name "*.pdf" -not -name "md5sum.txt" -name "GXB02039fastq.gz" -name "PCT0078fastq.gz" -type f -exec rm -f {} ;[/code]
à la place de [code=bash]find data_shortterm/run/ -maxdepth 2 -not -name ".html" -not -name ".png" -not -name ".log" -not -name ".log.gz" -not -name "*.pdf" -not -name "md5sum.txt" -not -name "GXB02039" -not -name "PCT0078" -type f -exec rm -f {} ;[/code]